Results for "PE"
Top-level pages
Linux for bioinformatician !!!
Linux, free operating system for computers, provides several powerful admin tools and...hese no so user-friendly tools are and how to use them, you could be spending lot of time trying to perform even the basic admin tas...3722 days ago
Perl one-liner for bioinformatician !!!
...s where knowing a little bit of Perl onliner is extremely helpful. Perl one-liners are small and aw...f files at once, and many more. Perl one-liners will make you th...t only non-empty lines in a fileperl -pe '$_ = ++$a." $_" if /re...nucleotide long random residue.perl -le 'print "a"x50'#generate...3645 days ago
Next generation sequencing in R or bioconductor environment
...- GRanges, GRangesList and GappedAlignments - which are suppor...it allows the search to be supervised by specifying a set of...ety of HT-Seq packages to a pipeline for ChIP-Seq data analysi...Seq (simplifies read counting per genome feature) DEXSeq (Inf...3641 days ago
Commercial and public next-gen-seq (NGS) software
..., is a mapping and analysis pipeline for short DNA sequences p...at a rate of 25 million reads per hour on a typical workstatio...ucational use and for use on open not-for-profit projects. Req...y progressively searching for perfect 3'-most k-mers using a D...3535 days ago
- Since few years miRNA has shown to play important role in therapeutic related research and also known to play vital role in controlling gene expression specifically at transcriptional a...
3512 days ago
- ...implest way of running linux command from within python code Example: if you want to run fastqc for QC of fastq file: from subprocess import Popen,PIPE,call p=Popen(["fastqc","-f",...
3566 days ago
Using Interval Trees to Query Genome Annotations by Position
...011/07/07/using-interval-trees-to-query-genome-annotations-by-position/ http://hackmap.blogspot.de/2008/11/python-interval-tree.html http://en.wikipedia.org/wiki/Interval_tree#Con...3566 days ago
Apps for Busy Bioinformatics Researchers !!!
...roid app that allows for the opening and analysis of DNA seque...r example "CDK4" or "cyclin dependent kinase 4" and BioGene wi..., .xls ) transfer files via open in, email, or iTunes file sh...es complete information via hyperlinks to the appropriate SGD...3558 days ago
- Pathway Analysis is usually performed with aim to enrich the genes with their f...iPathways,etc) and gene expression result for a specific conditions for instance...Impotant Database and Tools: GeneMANIA, Cytoscape, IPA and Metacore (...
3512 days ago
List of Biotechnology Research Laboratory, University, and Centre in India
...al Biology, Calcutta IIP - Indian Institute of Petroleum, Dehradun IHBT - Ins...il The Energy and Resources Institute (TERI) Petroleum Conservation Research...niversity Bharathiar University Bharati Vidyapeeth Deemed University Bhavna...2587 days ago
