Results for "PE"
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Comment on "Benchmarking Perl Module !"
...Benchmarking a Perl module involves measuring the performance of the module in ter...quick guide to benchmarking a Perl module using the Benchmark...ses the functionality of your Perl module. This program should...e taken, and the average time per iteration. You can use these...410 days ago
Comment on "Short-read assembly using Spades !"
...ge number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is...ng errors or low-quality bases. This step can be performed using various tools su...another round of assembly. This process can be repeated until a satisfactory asse...410 days ago
- ...tes, read lengths, and insert sizes. The ART is open-source and available for fre...es, and coverage levels. The wgsim tool is also open-source and available for fre...xford Nanopore. It can also simulate different types of sequencing errors, such a...
410 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl411 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...A env You can check using which perl - it should give you the perl that's located within your...ges via cpan it will also print the folder perl is installing the package i...:' by '-', lower-case everything, and add 'perl-' to the beginning. In your...411 days ago
Comment on "Short-read assembly using Spades !"
SPAdes (St. Petersburg genome assembler) is a popular tool fo.... It is available for Linux, macOS, and Windows operating systems. Prepare t...for each read. Run SPAdes: To run SPAdes, open the terminal and navigate to...416 days ago
Comment on "Tools for Sequence translation !"
...into amino acid sequences. It supports several genetic codes and can also perform reverse translation (i.e...into protein sequences. SeqKit: This is a command-line tool that can perform several sequence manipul...416 days ago
Comment on "Tools for Differential expression analysis"
...or groups. There are several tools available for performing differential expressi...ount data and provides methods for estimating dispersion and testing for differen...genes and provides a user-friendly interface for performing the analysis. Cu...416 days ago
Comment on "Basic command-line to run BLAST"
...nment that reflects its degree of similarity. BLAST is widely used in biological research because it is fast, efficient, and easy to use. It has helped researchers make many import...416 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
To install BioPerl on a macOS system, you can follow these steps: Open the Terminal app on your mac...mmand: brew update Install Perl by entering the following c...install cpanminus Install BioPerl by entering the following c...417 days ago
