Results for "PSI Blast"
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PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search...nificant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying...2344 days ago
- Synteny Imaging tool (Synima) written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchai...
2335 days ago
Bandage: interactive visualization of de novo genome assemblies
Bandage (a Bioinformatics Application for Navigating De novo Assembl...th it by moving nodes, adding labels, changing colors and extracting sequences. BLAST searches can be performed wit...2341 days ago
- Magic-BLAST is a tool for mapping large next-generation RNA or...ons. This is very different from other versions of BLAST, where each exon is scored as...a separate hit and read-pairing is ignored. Magic-BLAST incorporates within the NCBI...
2318 days ago
MGcV: the microbial genomic context viewer for comparative genome analysis
MGcV is an interactive web-based visalization tool tailored to facilitate small sca...per line) or by using the gene ID search tool or with the BLAST search tool Click "Visua...2285 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
Due to several requests, we are releasing an assingment of orthologs, determined using the same methods used in Hezroni et al. (BLAST, Whole Genome Alignment (WGA)...846 days ago
MMseqs2.0: ultra fast and sensitive protein search and clustering suite
...exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it...nsitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed....2233 days ago
BEAP: Blast Extension and Assembly Program
The Blast Extension and Assembly Program (BEAP) is a computer program that uses a short...DNA fragment, often a EST or partial gene segment, as "primer", to recursively blast nucleotide databases in an at...2152 days ago
FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nu...r experiments with complete and draft genomes, its accuracy is on par with BLAST-based ANI solver and it...2120 days ago
- Magic-BLAST is a tool for mapping large next-generation RNA or...ons. This is very different from other versions of BLAST, where each exon is scored as...a separate hit and read-pairing is ignored. Magic-BLAST incorporates within the NCBI...
2088 days ago
