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Five unique traits of effective computational biologist
...nation of traits that allow your computational as well as biological...er who call themself a hard-core computer programmer and avoid biolo...3. Be Social with biologist The computational biologist spends most...that if you aren’t willing to pull out all the stops you can&r...3958 days ago
How to install Perl modules manually, using CPAN command, and other quick ways
...This manual method is very useful when your computer or server is not connected...CPAN perl module installed in your server or computer before you can install any...rby countries) [] 4(2) ftp://carroll.cac.psu.edu/pub/CPAN/(3) ftp://cpan-du.viave...3958 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3958 days ago
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3953 days ago
Bioinformatics approach to Boar Taint
...he basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected SNPs will be genotyped in sample population for validation and then...3797 days ago
India's own first drug - from Biocon.
...normal skin cell for a pathogen, and sends out faulty signals that cause overproduction of new skin cells. More at >> Biocon, India's largest publicly-held biotechnology firm...3927 days ago
What is the objective of BINC examination?
I personally did not understand the objective behind BINC examination. Is government only try to show off that they are doing something to promote Indian bioinformatics sector? Moreover, It looks like BINC indirectly putting an extra burden to bioinformatician, mentally and financially.3927 days ago
Bio++ : C Language libraries for your biological need
...(including non-homogenous models),Tools for manipulating Hidden Markov Models,Im...RAA (Remote Acnuc Access), allowing you to fetch public databases like GenBank, E...r any substitution model, homogeneous or not. Population genetics A new file fo...3955 days ago
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Prime Minister’s 100k Genome Project
...british government. Genomics England will play a key role in building on the UK’s long track record as leader in medical science advances to push the boundaries by unlocking...3931 days ago
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Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
We study the organization and evolution of biological systems using computational biology and bioinformatics techniques. We seek to accurately predict links, such as specific molecu...3955 days ago
3956 days ago
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the...nical Conference, entitled "Camels and Needles: Computer Poetry Meets the Perl Prog...prolific Perl poet, Sharon is also the most widely published, having had the follow...3926 days ago
Bioinformatician special skills !!
Bioinformatician and Computational biologist are the only programmers on Earth who can explain multiplication and division are the same. Pretty codes for them ... /([+-]?\ *(...3903 days ago
Computational Biology in the 21st Century: Making Sense out of Massive Data
Computational Biology in the 21st Century: Making Sense ou...edical data, which will soon outstrip advances in computing power to perform current...ese massive datasets will require not only faster computers; it will require smarter...3910 days ago
University of life sciences UMB - Campus Ås, Norway
Universitetet for miljø- og biovitenskap på Ås3925 days ago
Install BLAST in Ubuntu/Linux and Window !
...nstead http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.7.1/ncbi-blast-2.7.1+-win64.exe #Run this installer using the defaults, it should put BLAST under C:\Program Files...1155 days ago
Read lines from input file – print lines that match a regular expression
#!/usr/bin/perl use strict; use warnings; my $line; #read the line-by-line for each line ask if it matches the regex print it if it matches while($line = )...2925 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3534 days ago
At what age did you gain passion in Bioinformatics?
Most of the bioinformatician were biologist ( yeah ... not all ;), and at later stage they gain a passion in Bioinformatics and learn it. When did you get inclined towards computational analysis of biological data?3247 days ago
Tryst with a Bioinformatician # Dr Altan Kara
...nterview series ... What push you to join Computational B...What fascinates you about Computational Biology/Bioinformatic...ic kit for immediate clinical purposes and an electrochemical...analyses for them. Besides computational skills, a bioinformat...2370 days ago
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Comment on "Benchmarking Perl Module !"
...for 100 iterations: timethese(100, { 'MyModule' => \&benchmark_my_module, }); Analyze the results: The timethese function will output the results of the benchmark...423 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular software tool for short-re...g SPAdes is usually as follows: spades.py -o output_directory -1 forward_reads.f...for an iterative assembly approach where the output from the previous assembly i...423 days ago