Results for "PU"
Top-level pages
Run miniasm assembler on nanopore reads !
...t takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the&nb...g sequences. Thus the per-base error rate is similar to the raw input reads. Find the detail of t...2335 days ago
Bioinformatics Web Application Development with Perl
...presence everywhere made it popular and, in some ways, the duc...L and request routing, and output. The days of slinging a stri...your code, leaving you to manipulate your business models inst...s themselves and it's still popular to this day, though PSGI c...2326 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
...many reads go to each reference, or splitting the reads into multiple output files, one per reference. BB...references can be binned with all of them, none of them, one of them, or put in a special "ambiguous" fil...2319 days ago
- ...OUTFILE.fasta EMBOSS:seqret Standard script that can be used for many purposes. One such use is fastq-...e printed to STDOUT. If [-o] is not specified (and output goes to STDOUT),...
2310 days ago
PerlOneLiner for Bioinformatician
...fields on all linesperl -MList::Util=sum -alne 'push @S,@F; END { print sum @S }...# Print GMT (Greenwich Mean Time) and local computer timeperl -le 'print scalar...t 10 lines of a file (emulate tail -10)perl -ne 'push @a, $_; @a = @a[@a-10..$#a]...2307 days ago
List of visualization tools for network biology
...network as a whole at the species and/or population level. Few tools published in BMC are listed here...twork analysis http://vlado.fmf.uni-lj.si/pub/networks/pajek/ PathwayAssi...ata http://pixie.princeton.edu/pixie CellPublisher Interactive represent...2293 days ago
List of visualization tools for genome alignments
...h leads to better results. But sometime, we need publication ready figure of geno...igh-depth read pileups and easy visualization of putative single nucleotide and s...ctools.com/mapview-s1367.html MultiPipMaker Computes alignments of similar regi...2288 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introdu...r update file cat file — output the contents of file less fi...e navigation head file — output the first 10 lines of file t...ing host — ping host and output results whois domain &m...2285 days ago
Awk for Bioinformatician and computational biologist
...ming language which allows easy manipulation of structured data and...of Awk is as followsAwk reads the input files one line at a time.For...iven actions for each line of the input.If the action is not given,...tead of print as the former doesn't put end-of-line character), $ a...2284 days ago
Computational resources for TE discovery and TE detection
...has generated increasing interest in developing new methods for their computational analysis. Following...tscout.bioprojects.org/ repeat-match http://mummer.sourceforge.net/ REPuter http://www.genomes.de/ R...2279 days ago
