Results for "PU"
Bio-Scripts
.....] ./fastq-dump [options] INPUT -A|--accession Rep...Dump only biological reads OUTPUT -O|--outdir...-Z|--stdout Output to stdout, all split data be...could be used for an optional output: if...2132 days ago
Perl script to merge LastZ overlaps
#!/usr/bin/perl use strict; use warnings; use 5.010; # Filter out the exact/direct overlaps from tab seperated alignment file. (lastz format=general- ready) # Do not inclide header in lastz outfile # USAGE: perl filterOverlaps.pl infile > outfile open my $fh, '2131 days ago
- ...lt: 8) --merge-assemblies= Merge best contigs from multiple assemblies into file --output= Directory where results are output (will be...
2129 days ago
- ...st rna-seq data from Schurch et al, 2016 study rule download_all: input: expand("rnaseq/raw...h individual file specified in sample_links rule download_reads: output: "rnaseq/raw_data/{sample}.f...
1522 days ago
Installing Porechop on Ubuntu !
...conda3/bin ➜ Porechop git:(master) porechop -h usage: porechop -i INPUT [-o OUTPUT] [--format...olish, this option is on by default when outputting reads into...2112 days ago
- ....cpp.o [ 69%] Building CXX object src/CMakeFiles/sniffles.dir/realign/SWCPU.cpp.o /home/urbe/Tools/nextsv/aligners_and_callers/Sniffles-1.0.5/src/realign/SWCPU.cpp: In constructor ‘SWCPUCor...
2105 days ago
Install Python locally on shared Linux server !
...on make && make install #Notice the prefix option, it is mandatory for this to work. The value of prefix option is to specify where to put the #related output of make command, by default...2104 days ago
- ...dry-run may be specified to output the generated command line w...mples given their counts and the output of DetermineGermlineContigPl...Compare two input ".sam" or ".bam" files....ilities given family and/or known population genotypes Calculat...
2081 days ago
Perl script to break the contigs by 'N'
...NNNNN region in the contig my @regions=(); my @bases=split //,$seq; push(@bases,"E"); #This extra po...for (my $i=0;$i=$minNlen) { my $end=$i; my $ini=$end-$n+1; push(@regions,"$ini $end");...2069 days ago
- library(vcfR) # Input the files. vcf
2066 days ago
