Results for "PU"
Bio-Scripts
Generates a genome coverage plot with R
library(CoverageView) ##draw a coverage plot for a test case BAM file #get a BAM test file treatBAMfile2061 days ago
Installing pb-assembly on Linux !
...ixesproto/5.0-foss-2016a octopus/4.0.1 flex/2.5.39 Octopus/7.0-foss-2016a flex/2.5.39-...2040 days ago
- ...it-sym-local/cache' make -j -f /home/users/j/n/jnarayan/FALCON-examples/git-sym.makefile 'greg200k-sv2.2' curl -L https://downloads.pacbcloud.com/public/data/git-sym/greg200k-sv2...
2040 days ago
Perl script to create a consensus of nucleotide sequences !
...[split '', uc $_] } @mi; foreach my $j ( 0 .. $w-1 ){ $H{ $_->[$j] }->[$j]++ for @mi_letters; } push @{$H{ uc $_ }}, $h{$_} for keys %h; # example: push @{$H{G}}, $g; }...2038 days ago
- ...neNPK.o ReadCommandLineNPK.c ReadCommandLineNPK.c: In function ‘getUserInput’: ReadCommandLineNPK.c:651:...eadCommandLine.o ReadCommandLine.c ReadCommandLine.c: In function ‘ReadInputFileComplexes’: ReadCommandL...
2032 days ago
Installing Platypus on Ubuntu !
...://github.com/andyrimmer/Platypus.git Cloning into 'Platypus'... remote: Enumerating obj...re/man/man5 (py27) ➜ Platypus git:(master) pip install Cyt...) ✗ make echo 'Building Platypus' Building Platypus cd src;...! File: /home/urbe/Tools/Platypus/src/cython/cwindow.pxd tr...2025 days ago
- ...# Yellow Blue='\033[0;34m' # Blue Purple='\033[0;35m' # Purple Cyan='\033[0;36m'...Yellow BBlue='\033[1;34m' # Blue BPurple='\033[1;35m' # Purpl...ellow On_Blue='\033[44m' # Blue On_Purple='\033[45m' # Purple...
2024 days ago
- #! /usr/bin/Rscript ## Collect arguments args
2010 days ago
Perl script to run in parellel !
...$count++; if ( ( $count % $i ) == 0 ) { if ( !output_exists($genome{$chr_set}{nam...} } $pm->finish; } $pm->wait_all_children; sub output_exists { my $chr_set =...1692 days ago
- # $1 = vcf file # $2 = input bam file # $3 = output QV file module load samtools NUM_BP=`samtools depth $2 | perl -e '$c = 0; while(){chomp; @s = split(/\t/); if(scalar(@s) >= 3){$c++...
1610 days ago
