plumber:An R package that converts your existing R code to a web API
plumber allows you to create a REST API by merely decorating your existing R source code with special comments. Take a look at an example. # plumber.R #* Echo back the input #* @param msg The message to echo #* @get /echo function(msg=""){ list(msg = paste0("The message is: '", msg, "'"...Tags: plumber, R, package, converts, existing, code, web, API
1873 days ago
OMTools: a software package for visualizing and processing optical mapping data
OMTools, an efficient and intuitive data processing and visualization suite to handle and explore large-scale optical mapping profiles. OMTools includes modules for visualization (OMView), data processing and simulation. These modules together form an accessible and convenient pipeline for optica...Tags: OMTools, software, package, visualizing, processing, optical, mapping, data
1858 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addit...Tags: chromoMap, R, package, Interactive, Visualization, Annotation, Chromosomes
1843 days ago
modelStudio: a package automates the explanation of machine learning predictive models
The modelStudio package automates the explanation of machine learning predictive models. This package generates advanced interactive and animated model explanations in the form of a serverless HTML site. It combines R with D3.js to produce plots and descriptions for...Tags: modelStudio, package, automates, explanation, machine, learning, predictive, models
1558 days ago
Tags: IgBLAST, NCBI, package, classifying, analyzing, immunoglobulin, IG, T-cell, receptor, TCR, variable, domain
1557 days ago
PANEV: an R package for a pathway-based network visualization
PANEV (PAthway NEtwork Visualizer) is an R package set for gene/pathway-based network visualization. Based on information available on KEGG, it visualizes genes within a network of multiple levels (from 1 to n) of interconnected upstream and downstream pathways. The network graph visualizati...Tags: PANEV, R, package, pathway, network, visualization
1540 days ago
netGO: R-Shiny package for network-integrated pathway enrichment analysis
netGO is an R/Shiny package for network-integrated pathway enrichment analysis.netGO provides user-interactive visualization of enrichment analysis results and related networks. Currently, netGO supports analysis for four species (Human, Mouse, Arabidopsis thaliana,and Yeast)These...Tags: netGO, R-Shiny, package, network, integrated, pathway, enrichment, analysis
1537 days ago
Tags: GeneMates, R, package, Horizontal, Gene, Co-transfer, Bacteria, Associations, Population, Structure
1513 days ago
Tags: PheWAS, R, package, accessible, interface, phenome, wide, association, study
1368 days ago
GROMACS: a versatile package to perform molecular dynamics
GROMACS is a versatile package to perform molecular dynamics, i.e simulate the Newtonian equations of motion for systems with hundreds to millions of particles. GROMACS is able to work with many biochemical molecules like proteins, lipids and nucleic acids. The WeNMR GROMACS web portal combines t...Tags: GROMACS, versatile, package, perform, molecular, dynamics
1361 days ago