Seal: SEquence ALignment evaluation suite
...re correctly or incorrectly mapped. Computing run times and measures of accuracy. Seal has interfaces to evaluate the following software packages: Bowtie BWA MAQ mrFAST...2307 days ago
karyoploteR: plot whole genomes with arbitrary data
...ntations of whole genomes with arbitrary data plotted on them. It is inspired by the R base graphics system and does not depend on other graphics packages. The aim of karyoploteR is to...1944 days ago
DendroPy: a Python library for phylogenetic computing
...roPy, with detailed tutorials and documentation, is at: http://dendropy.org/ DendroPy is also hosted in the official Python repository: http://packages.python.org/DendroPy/ Requi...2197 days ago
Epiviz: an interactive visualization tool for functional genomics data.
...ization. It has a flexible plugin framework so users can addd3 visualizations. You can see a video tour here. https://bioconductor.org/packages/release/bioc/html/epivizr.htm...2120 days ago
Instructions for Creating Your Own R Package
...R package. Even beyond this course, youmay find this useful for storing functions you create for your own research or for editing existingR packages to suit your needs. This gui...1530 days ago
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Biotite: A general framework for computational biology
...r the beginners in programming and computationally efficient because of the implementation of Numpy and Cython. Biotite consists of four sub packages: sequence, structure, databas...1958 days ago