Comment on "Short-read assembly using Spades !"
...nTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is a brie...e in FASTQ format, which contains the sequencing reads. If the reads are paired-end, they should be provided in s...mes of the input files containing the paired-end reads, and <output_dir> with t...422 days ago
Comment on "List of non-commercial NGS genotype-calling software"
Delly – Structural variant discovery by integrated paired-end and split-read analysis. [ paper...;] manta – Structural variant and indel caller for mapped sequencing data. [ paper-2015 ...1143 days ago
2138 days ago
Comment on "Software packages for next gen sequence analysis"
...is a scaffolder and a reference-free evaluator of assembly quality. It uses a draft genome assembly, a genome map, and high-throughput sequencing paired-end data. It has been succesfully tested...2909 days ago
Comment on "List of popular bioinformatics software/tools"
skewer (transferred from https://sourceforge.net/projects/skewer) implements the bit-masked k-difference matching algorithm dedicated to the task of adapter trimming and it is specially designed for processing next-generation sequencing (NGS) paired-end sequences. https://github.com/relipmoc/skewer3573 days ago