How to install Perl modules on Mac OS X in easy steps !!
Today at work, I learned how to install Perl modules using CPAN. It’s a lot easier than I thought. You see, for the past couple of years, I’ve been a bi...2754 days ago
Structural variation: the hidden genomic treasure
...PEMera computational and simulation framework for discovering SVs by paired-end read mapping.2009,2007 GASV...nk PEMer, structural variant discovery in 454 sequencing data by paired-end mapping Link TIGER,...2702 days ago
Software and Tools to detect structure variation with long reads !!
...r sensitivity for SV calls using tiled local assemblies across the entire genome instead of "signature" regions Genotyping of SVs with Illumina paired-end reads from WGS samples Mor...2607 days ago
String graph based genome assembly software and tools !
...Such seeds form the basis for BASE to build extension trees and then to use reverse validation to remove the branches based on read coverage and paired-end information, resulting in hig...2328 days ago
Installing Perl environment on Linux
By using plenv, you can easily install and switch among different version of Perl. This will be installed under your home directory in~/.plenv. Install latest Perl...2321 days ago
BBTools for bioinformatician !
...can only run single-ended or paired-ended in a single run, but it has...nondeterministic when run in paired-end mode with multiple threads, b...pair" out-of-order reads from paired-end data files Code:...rage stats (region covered by paired-end reads) BBMap has a "...2270 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration of the command line, which you may not have seen or used much before. All of the commands below c...2244 days ago
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