Results for "Pangenome"
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pggb: the pangenome graph builder
This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining local linearity is important for the interpreta...Tags: pggb, pangenome, graph, builder
1379 days ago
- PPanGGOLiN (Gautreau et al. 2020) is a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes. It has the specificity to partition the pangenome ...
Tags: PPanGGOLiN, Depicting, microbial, species, diversity, Partitioned, PanGenome, Graph, Linked, Neighbors
144 days ago
Panacus : A Counting Tool for Pangenome Graphs
panacus is a tool for calculating statistics for GFA files. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., nodes do not overlap and consequently, each link (L) points from the end of one segment (S) to the start of ano...Tags: Panacus, Counting, Tool, Pangenome, Graphs, GFA
10 days ago
