Results for "Parallel Processing"
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Metabolomics- A realm of small molecules For detail lectures on Metabolomics: https://www.bits.vib.be/index.php/training/117-mass-spec-data-processing#download http://compomics.co...3862 days ago
Public Databases for Bioinformatics !
...nford.edu *NOT BACKED UP* Some parallel programming patterns: # gzip a bunch of files parallel gzip -- *.FILESTOGZIP # fo...hub.com/nboley/grit/ grit/lib/multiprocessing_utils.py) import os impor...time import random import multiprocessing class ProcessSafeOPStream(...1140 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and a...ike SKESA, Velvet and Megahit, so you can take advantage of the pre- and post-processing the Shovill provides with tho...1220 days ago
- RNA Seq Basic Galaxy Tutorial RNA-Seq tutorial based on Trapnell et al. (2012)...analysis of short RNA expression such as a quality control of the raw reads, processing of the raw reads for the subs...
3654 days ago
COSMOS, our workflow management system for NGS data
COSMOS, our Python-based management system for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access publ...3575 days ago
- Google Genomics provides an API to store, process, explore, and share DNA sequence reads, reference-based alignments...mponent analysis or Hardy-Weinberg equilibrium, in minutes or hours, by using parallel c...
3489 days ago
RNA-Seq De novo Assembly Using Trinity
Trinity, developed at the Broad Institute and the Hebrew University of Jerusalem, represents a novel method for the...these disjoint graphs. Butterfly then processes the individual graphs in parallel,...2966 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or...ical parameters (mutation bias along triplets, transition/transversion) post-processing step to group gapped alignmen...2926 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel s...
2915 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
...-coding genes, or neutral sequences. Satsuma does not require any pre-processing, such as repeat masking, since it will automatically detect ambiguous mappings. Satsuma has parallelization built-in and is designed...2915 days ago
