Results for "Parameters"
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...to configure it by executing cpan, you should set some configuration parameters as shown below. I have shown only the important configuration parameters below. Accept all the default...3948 days ago
Computer simulation of genetic mechanism !!
...n and Homepage Aladyn Tools to investigate how demographic parameters, populations genetics and abi...of the experimental pipelines for RNA-Seq, employing a minimal set of parameters. http://sammeth.net/confluenc...2973 days ago
- +9 more Blogs
Bookmarks
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...sents a significant improvement over the state-of-the-art for PacBio read mappers. GraphMap was also designed for ease-of-use: the default parameters can handle a wide range...3223 days ago
- ...oth simple and complex rearrangements from paired-end sequencing data. Users could ran it easily by just alling SVelter.py with proper parameters. It's also possible to ran it...
2986 days ago
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Pages
Genome Assembly Tools and Software - PART2 !!
...raphs and frequency estimation via Expectation Maximization on all reads. VelvetOptimiser 2.2.5 – Automatically Optimise Velvet Assembler ParametersVelvetOptimiser is a mult...2684 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...he Flux Simulator aims at providing a deterministic in silico reproduction of the experimental pipelines for RNA-Seq, employing a minimal set of parameters. http://flux.sammeth.net/simu...3735 days ago
List of In-silico Binding Site Prediction Tools
...tify putative contacting residues. However, whilst most of this prediction process can be automated, visual inspection and manual adjustments of parameters, such as the distance thresho...3742 days ago
- +10 more Top-level pages
Wire posts
News
- ...s GUI than reading the help file and trying to understand the various parameters.Here is a little example usin...g up a window that helps me to create the chart and tweak the various parameters. Finally, I find the underly...
3550 days ago
Webinar on Streamlining large scale analysis using the Strand NGS Pipeline Manager on 24 Feb 2016
...GS allows users to execute a sequence of analysis steps with specific parameters - all without any manual inte...resent in Strand NGS. The packaged pipelines have well-chosen default parameters and are suitable for users an...3010 days ago
- +3 more News
Bio-Scripts
Count GC Content in nucleotide sequence with Perl
...-------------------------------------------------- #Deal with passed parameters #---------------------------...) ) { print "Couldn't create $out_file\n"; exit; } print "Parameters:\nfasta file = $fasta_file\no...2904 days ago
- ...nearly with sequence length. With default parameters,databases are are roughly...reason this program is disrupted during a run, restart with the same parameters and it will automatically re...
2691 days ago
- +12 more Bio-Scripts
Tags
Frequent parameters for bioinformatics tools !
Third party executable parameters and options. Trimmomatic “ILLUMINACLIP:...:2:30:10” “LEADING:15” “TRAILING:15” “SLIDINGWINDOW:4:20” “MINLEN:20” “TOPHRED33” Filtlong --min_length 500 --min...Tags: Frequent, parameters, bioinformatics, tools
1284 days ago
Comments
Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp396 days ago
Comment on "Short-read assembly using Spades !"
...repeated until a satisfactory assembly is achieved. These are the general steps for short-read assembly using SPAdes. However, the specific parameters used for SPAdes and the evalu...414 days ago
- +8 more Comments
