GPOPSIM: a simulation tool for whole-genome genetic data
...flexible parameter settings for a wide discipline of users, especially can simulate multiple genetically correlated traits with desired genetic parameters and underlying genetic archit...2300 days ago
Seal: SEquence ALignment evaluation suite
...ternatively, generating an artificial reference genome based on input parameters (length, repeat count, repeat...Simulating reads from random locations in the genome based on input parameters of read length, coverage, seq...2314 days ago
2291 days ago
transrate: Understanding your transcriptome assembly
...tal evidence such as the sequencing reads, reporting quality scores for contigs and assemblies. This allows you to choose between assemblers and parameters, filter out the bad contigs f...2123 days ago
Heatmapper: web-enabled heat mapping for all
...Heatmapper offers a number of simple and intuitive customization options for easy adjustments to each heat map’s appearance and plotting parameters. Heatmapper also allows users...2043 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
...-wide synteny in PDF. Each of these programs are included with the Synima package, and a pipeline for their use. Synima has a range of graphical parameters including size, colours, orde...2014 days ago
lordFAST: sensitive and Fast Alignment Search Tool for LOng noisy Read sequencing Data
...rates. lordFAST is specially designed for aligning reads from PacBio sequencing technology but provides the user the ability to change alignment parameters depending on the reads and ap...1986 days ago
1965 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by line. Users can change the pipeline or fine-tune the parameters by modifying its configuration file.1538 days ago
pbmm2:A minimap2 frontend for PacBio native data formats
pbmm2 is a SMRT C++ wrapper for minimap2's C API. Its purpose is to support native PacBio in- and output, provide sets of recommended parameters, generate sorted output on-the-fly, and...1538 days ago