Results for "Pathway Analysis"
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statistical analysis and visulization of functional profiles for genes and gene clustersBioconductor version: Release (3.3)This package implements methods to analyze and visua...2891 days ago
Linux command line exercises for NGS data processing
The purpose of this tutorial is to introduce students to the frequently used tools for NGS analysis as well as giving experience...2886 days ago
- SAMtools: Primer / Tutorial by Ethan Cerami, Ph.D.keywords...open-source tool used in next-generation sequence analysis. This primer provides an intr...ared towards those new to next-generation sequence analysis. The primer is also designed...
2885 days ago
- Recent studies of the human genome have indicated that regulatory elements (e.g. prom...no software that can take full advantage of network theory approaches for the analysis of chromatin interaction data...
2881 days ago
- CSBB is a command line based bioinformatics suite to analyze biological data acquired...logy and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the n...
2879 days ago
Bioinformatics tools and software
USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW. UPARS...2873 days ago
- Microbiome analysis using a single application MEGAN6...d in one application. Taxonomic analysis using the NCBI taxonomy or a...taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggN...ns of sequencing reads. Blast-like analysis can be performed using DIAMON...
2853 days ago
- This tutorial includes resources for learning more about PacBio data and bioinformatics analysis, and includes content suitabl...d Applications: De Novo Assembly Transcriptome analysis Base Modification Analysis...
2639 days ago
- KisSplice is a software that enables to analyse RNA-seq da...l possible post-treatments meant to facilitate the analysis of the results. The choice of...criptome and on the need to perform a differential analysis, as summarised in the followi...
2831 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1238 days ago
