Software packages for next gen sequence analysis
...xt Generation Sequencing data analysis. * JMP Genomics - Next gen vi...ating with Lasergene Sequence Analysis software for additional analy...e genomes, and carry out post-analysis. ZOOM is developed to be high...pecifically optimized for the analysis of large numbers (millions) o...3256 days ago
Comprehensive list of visualization tools for biological pathways
...nd reactions. Activation of a pathway typically leads to a change of state in the cell. Pathways come in different flavors, d...sio Biological pathway analysis software that allows drawing,...analysis and customization of pathway maps http://pathways.embl.de/...2301 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological...nd quantitation of their volumes. PocketPicker Grid-based technique for the analysis of protein pockets. PocketPic...2216 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...udying using ion channels for analysis of single RNA/DNA structures)...K) Output: Downstream Analysis of Variants PrediXcan D...linear regression framework, Pathway Association Analysis, Genome-w...variants prior to statistical analysis of sequence based disease ass...2922 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation &n...of using GeneSCF over other enrichment tools is that, it performs enrichment analysis in real-time (v1.1 and above)...2885 days ago
2883 days ago
Genome Assembly Tools and Software - PART1 !!
...uence assembly , DNA sequence analysis, contig editing, file format...embly accuracy for downstream analysis. It combines the information...form automated comparison and analysis of any generated assemblies...Genome Assembly and Variation Analysis Cortex is an efficient and...2699 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and s...tilities for Next-Generation Sequencing (NGS) data analysis masukomi/jsonpath-perl ...dern Perl Framework for High Throughput Sequencing analysis gbarr/perl-libnet - per...2503 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in...diagram, resulting from a cladistic analysis, which depicts a hypothetical...methods. ingroup -- In a cladistic analysis, the set of taxa which are hy...es of characters used in a cladistic analysis, either original or derived....2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from R...phylogenetic trees using SNPs (based on k-mer analysis) Software (C) https://sourc...l/mash Kraken Taxonomic assignment in metagenome analysis by exact k-mer search; L...2385 days ago