2634 days ago
BBTools for bioinformatician !
...----------------------------- Calculate heterozygous rate for sequence data Code: $ kmercountexact.sh in=reads.fq khist=histogram.txt peaks=peaks.txt You can examine the h...2263 days ago
SIMA C++ Implementation: Simultaneous Multiple Alignment of LC/MS Peak Lists
...e c++ implementation for SIMA - Simultaneous Multiple Alignment of LC/MS Peak Lists. The package contains C...er, F.A. Hamprecht (2011). SIMA: Simultaneous Muliple Alignment of LC/MS Peak Lists, Bioinformatics 27(7):9...2347 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...a python script for analysing the mathematical distributions present in the K-mer spectra in order to determine how much content is present in each peak. This README only contains s...1974 days ago
Next generation sequencing in R or bioconductor environment
...C ChIP-Seq. chipseq The chipseq package combines a variety of HT-Seq packages to a pipeline for ChIP-Seq data analysis. Documentation BayesPeak BayesPeak is a peak calling package for...3617 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...enome tracks; allows user to compare DNA expression/binding; Input: multiple: SGR/TXT, BED, BED6, GFF; if using prealigned sequence data- use MACS peak caller: BAM, BED, SAM, ELAND...2901 days ago
2256 days ago
1501 days ago
Comment on "Estimate Genome Size"
...ph of the histogram jellyplot.pl fastq.counts_0.histo # look at fastq.counts_0.histo.pdf and identify the approximate peak # use find_valleys.pl to help pinpoint the actual peak find_valleys.pl fastq.counts...1890 days ago