Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified b...2113 days ago
Julia Programming Language, a Python and R rival
Big data has grown to become one of the most lucrative fields. In fact, data scienti...is faster than both Python and R. This is a very critical aspect that is given special attention in the big data pro...2077 days ago
1833 days ago
List of perl special symbols !
There are some variables which have a predefined and special meaning in Perl. They are the...ch as $_ ( explained below ). Special Symbols – File handlers...line arguments $ARGV – special file handle for command line...w.tutorialspoint.com/perl/perl_special_variables.htm1556 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code be execute...d (replace with nothing) perl -pne 's/[^a-zA-Z\s]*//g' text_withSpecial.txt > text_lettersOnly.txt...1378 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for example, in the development of source codes, sta...634 days ago
941 days ago