JBrowse: Embeddable genome browser built completely with JavaScript and HTML5
JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl. Headline Features: Fast, sm...2130 days ago
2091 days ago
FinisherSC:a repeat-aware tool for upgrading de novo assembly using long reads
...ds in contigs.fasta or raw_reads.fasta using the following command. perl -pe 's/>[^\$]*$/">Seg"...> newRaw_reads.fasta cp newRaw_reads.fasta raw_reads.fasta perl -pe 's/>[^\$]*$/">Seg"...2078 days ago
Synima: a Synteny imaging tool for annotated genome assemblies
Synima written in Perl, which uses the graphical features of R. Synima takes orthologues computed from reciprocal best BLAST hits or OrthoMCL, and DAGchainer, and outputs an ov...2007 days ago
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ANItools web: a web tool for fast genome comparison within multiple bacterial strains
ANItools is a software package written by PERL scripts that can be run in a Linux/Unix system. If you want to compare bacterial genomes and calculate their average nucleotide identit...1992 days ago
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MFannot : a program for the annotation of mitochondrial and plastid genomes
...gram for the annotation of mitochondrial and plastid genomes MFannot is a program for the annotation of mitochondrial and plastid genomes. It is a PERL wrapper around a set of diver...1707 days ago