Genome Assembly Tools and Software - PART1 !!
...a. Trinity combines three independent software modules: Inchworm, Chrysalis, and...en eukaryotic datasets. The command-line Perl script and additional files van...ndash; De Novo Assembler EPGA2 updates some modules in EPGA which can improve mem...2687 days ago
Perl Special Vars Quick Reference
...$0 Program name. $^O Operating System name. Perl Status Info $] Old: Version and patch number of perl interpreter. Deprecated....aths. %INC Keys are filenames, values are paths to modules included via use, requir...2645 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with you...ols - various standalone perl scripts chromatic/little_pla...e your own repository of Perl modules rcaputo/reflex - Reflex...2491 days ago
2490 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determinati...containing long sequence (e.g., ONT or PacBio reads, draft genomes) Software (Perl)...2372 days ago
Edit distance application in bioinformatics !
...to array of strings There are many different modules on CPAN for calculating th...nshtein::Damerau defaults to using a pure perl implementation, but if you've...distance. Text::Fuzzy::PP is a pure perl implementation of the same inter...2342 days ago
Bioinformatics Web Application Development with Perl
...dash;were easy to create with Perl and CGI. Thanks to Perl's ubiquity as a language for...most mature of the modern top Perl web frameworks, yet it retain...ode. Because it builds on the Perl DBI, it scales everywhere fro...course the CPAN has modules for almost any NoSQL database...2323 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -...e numbers only non-empty linesperl -pe '$_ = "$. $_" if /./' #...ch a pattern (emulate grep -c)perl -lne '$a++ if /regex/; END {p...Time) and local computer timeperl -le 'print scalar gmtime'perl...2303 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made...-python and http://bioinformaticsonline.com/discussion/view/459/python-vs-perl M...2256 days ago
Installing Bio::SCF perl module
...ow to get the right compiler. Modules may have dependencies on other modules (almost always on CPA...a somewhat recent version of Perl (version 5.8 or above). More about the basic perl module insta...ar zxf Bio::SCF.tarcd Bio::SCFperl Makefile.PLmakemake testmake ins...2220 days ago