Converting a VCF into a FASTA given some reference !
Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified by o...2129 days ago
1849 days ago
List of perl special symbols !
There are some variables which have a predefined and special meaning in Perl. They are the variables that use punctuation...Special Symbols – File handlers $@ Perl error string $! Error number...More at https://www.tutorialspoint.com/per...1573 days ago
Perl one-liner for beginners !
I often use the following arguments to perl: -e Makes the line of code...each line and prints it perl -ne '$cnt = tr/"//;print...ch line, followed by tab perl -pe 's/(.*)/string\t$1/'...e any uppercase letters. perl -ne 'print unless m/[A-Z...nless it contains a number per...1395 days ago
Common Bioinformatics Interview Questions !
The possibility of an interview for a bioinformatics position in the life sciences m...xtremely capable of mastering new techniques with others ... At the end of the day, remember that you're questio...1212 days ago
Run bash script in Perl program !
BioPerl is a compilation of Perl modules that can be used to build bioinformatics-related Perl scripts. It is used, for exam...ertain Unix/shell commands in Perl script, so it's hard to deter...ax: qx/command/; It's a Perl operator (perlop) that execut...it can be easily converted to Per...651 days ago
957 days ago
Free Books on Machine Learning and Artificial Intelligent !
An Introduction to Statistical LearningThis book provides a broad and less techni...lib, Scikit-Learn, and related packages. This resource is perfect for tackling day-to-day issues such as cleaning, mani...430 days ago