Results for "Perl in a day"
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PerlOneLiner for Bioinformatician
...------- # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -...ch a pattern (emulate grep -c)perl -lne '$a++ if /regex/; END {p...Time) and local computer timeperl -le 'print scalar gmtime'perl...ltime)[2,1,0]' # Print yesterday's dateperl -MPOSIX -le '@now =...2316 days ago
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinform...e built from the updatedb command. Much faster than find sed -i 's/day/night/g' file — find all occurrences of day in a file and replace them wi...2294 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made...n-python and http://bioinformaticsonline.com/discussion/view/459/python-vs-per...2269 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they ar...re a somewhat recent version of Perl (version 5.8 or above). More about the basic perl module installation steps che...b-1.9 In order to install this perl extension you have to install...tar zxf Bio::SCF.tarcd Bio::SCFper...2232 days ago
LINKS scaffolder bloomfilter setting !
➜ bin git:(master) ✗ ls -l total 68 drwxrwxr-x 3 urbe urbe 40...it:(master) ✗ swig -Wall -c++ -perl5 BloomFilter.i ➜ bloomfilte...cxx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-m...cxx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-m...and -s. ERROR fixed per...2165 days ago
Parallel Processing with Perl !
...bioinformatics analysis. One best way is using perl threads and forks. Knowing ho...llion lines in the dataset it takes more than a day to iterate through the whole d...e is a very simple and efficient technique with perl which i have been using. I a...2094 days ago
- The benchmark module is a great tool to know the time the code takes to run. The output is usually in terms of CPU...re processor it is becoming a neccesity to know about the CPU time taken by our per...
2094 days ago
Steps to find all the repeats in the genome !
To find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with...to extract the information you need. There is a Perl tool called "one_code_to_find...from the source provided. Use the provided Per...262 days ago
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