Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput shor...2705 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variable. @_ Subroutine parameters. $a$b sort comparison routine variables. @ARGV The command-line args....2663 days ago
Awesome perl frameworks, libraries and software - PART 1
...;- The leading static analyzer for Perl. Configurable, extensible, pow...ion of OpenResty written mostly in Perl. Please check out the new Open...sp;- A simple TCP proxy written in Perl. Uses IO::Socket::INET and IO:...ogramming language, implemented in Perl. audreyt/pugs - A Perl 6...2508 days ago
2508 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++)...2390 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau&ndas...2360 days ago
Bioinformatics Web Application Development with Perl
...anks to the new tools and techniques of modern Perl. See, for example, the ever-growing list of technologies Built in Perl. Modern Perl Web Frameworks...be-all, end-all of data storage and access in Perl. DBIx::Class DBIx::Class&nbs...2340 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -pe '$_ .= "\n"'perl -pe 's/$/\n/'perl -nE 'say' # Double space a fi...2321 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used to build just about anything, which will be made easy with the right tools/libraries. Professionally,...2274 days ago
Installing Bio::SCF perl module
...ON=\"1.01\" -fPIC "-I/usr/lib/x86_64-linux-gnu/perl/5.22/CORE" -DLITTLE_ENDIAN SCF.cIn file included from /usr/lib/x86_64-linux-gnu/perl/5.22/CORE/perl.h:5546:0, from SCF.xs:5:SCF.xs...2237 days ago