Tools and Method for Haplotype phasing !
...sp;http://www.people.fas.harvard.edu/~junliu/plem/ “Read-backed phasing” algorithm: http://www.broadinstitute.org/gsa/wiki/index.php/Read-backed_phasing_algorithm SHAPE-IT: htt...1352 days ago
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List of Bioinformatics Software Tools for Next Generation Sequencing
...Variant Identification Germline Callers IMPUTE2 Description: phasing observed genotypes and imputi...Beagle version 4 Description: software package: genotype calling, phasing, imputation of ungenotyped ma...2922 days ago
Genome Assembly Tools and Software - PART1 !!
...de-novo assembly using long reads. WhatsHap – Haplotype Assembly for Future-Generation Sequencing Reads WhatsHap is a software for phasing genomic variants using DNA se...2699 days ago
Biinformamatics Lead at Google Life Sciences
...ulation data. Develop novel platform-level analytical tools for sequence-based assays (assembly, annotation, variant calling and interpretation, phasing, genome structure, etc.), exp...3501 days ago
pWhatsHap: a parallel, high-performance version of WhatsHap
Given the potential relevance of efficient haplotyping in several analysis pipelines, we have designed and engineered pWhatsHap, a parallel, high-performance version of WhatsHap. pWhatsHap is embedded in a toolkit developed in Python and supports genomics datasets in standar...Tags: pWhatsHap, parallel, high-performance, WhatsHap, Phasing, Phase, Genome, Alles, Haplotype
2012 days ago
ALLHiC: Phasing and scaffolding polyploid genomes based on Hi-C data
The major problem of scaffolding polyploid genome is that Hi-C signals are frequently detected between allelic haplotypes and any existing stat of art Hi-C scaffolding program links the allelic haplotypes together. To solve the problem, we developed a new Hi-C scaffolding pipeline, called ALLHIC,...Tags: ALLHiC, Phasing, scaffolding, polyploid, genomes, Hi-C, data, assembly
1976 days ago