Results for "Plot"
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Dot, an interactive viewer for genome-genome comparison
Dot, an interactive dot plot viewer that allows genome scientists to visualize genome-genome alignments in order to evaluate new assemblies and perform exploratory comparative gen...2301 days ago
karyoploteR: plot whole genomes with arbitrary data
karyoploteR is an R package to create karyoplots, that is, representations of whole genomes with arbitrary data plotted on them. It is inspired by...on other graphics packages. The aim of karyoploteR is to offer the user an eas...1949 days ago
Genome assembly stats plotting
...h/count distribution assembly-stats supports two widely used presentations of these values, tabular and cumulative length plots, and introduces an additional circular plot that summarises most commonly...2256 days ago
D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way
D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Si...ts large genome and you can interact with the dot plot to improve the visualisation....the two genomes. Then, the PAF file is parsed and plotted into an interactive plot w...2153 days ago
chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
...ap chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap"...t-maps, group annotations, adding hyperlinks, and labelling. The plots can be saved as HTML documen...1848 days ago
KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies
...sequence file. Adds metadata in output for easy plotting. gcp: K-mer GC Proc...ces contain k-mers within a provided hash. plot: Plotting tools. Contains sev...t NGS reads. profile: Creates a K-mer coverage plot for a single sequence. Takes...1979 days ago
Genome U-Plot: a whole genome visualization
Genome U-Plot for producing clear and intuitive graphs that allo...agenesis events. The main features of the Genome U-Plot are its layered layout, its h...qualities. https://github.com/gaitat/GenomeUPlot2120 days ago
pyGenomeTracks: Standalone program and library to plot beautiful genome browser tracks
pyGenomeTracks aims to produce high-quality genome browser tracks that are highly customizable. Currently, it is possible to plot: bigwig bed (many options) bedgraph links (represented as arcs) Hi-C matrices (if HiCExplorer is installed)2002 days ago
genoPlotR - plot gene and genome maps project!
genoPlotR is a R package to produce reproducible, publicatio...L, blast, Mauve, and from user-generated tab files Plot several subsegments of the sa...utomatic or manual placement of the segments on the plot Add annotations to all the l...1969 days ago
EyeChrom: Visualizing Chromosome Count Data From Plants
It's goal is to show chromosmal data per genus. Select the genus, and the plot will show the records found for it in the Chromosome Counts Database. note: Report an issue via Gihub:...1942 days ago
