MetaSim A Sequencing Simulator for Genomics and Metagenomics.
Our software can be used to generate collections of synthetic reads that reflect the diverse taxonomical com...e using a simulation of a number of different sequencing technologies. A populati...2346 days ago
jobTree based python wrapper to run the genome simulation tool suite Evolver
evolverSimControl (eSC) can be used to simulate multi-chromosome genome evolution on an arbitrary phylogeny (Newick format). In addition to simply running evolver,&...2342 days ago
GPOPSIM: a simulation tool for whole-genome genetic data
GPOPSIM is a simulation tool for pedigree, phenotypes, and genomic data, with a variety of population and genome structures and trait genetic architectures. It provides flexible parameter settings fo...2302 days ago
Mesquite: A modular system for evolutionary analysis
...biologists organize and analyze comparative data about organisms. Its emphasis is on phylogenetic analysis, but some of its modules concern population genetics, while others do non-phylogen...2247 days ago
EWAS: epigenome-wide association study software 2.0
EWAS2.0 can analyze EWAS data and identify the association between epigenetic variations and disease/phenotype. On the...more distinctive features. EWAS2.0 software was developed based on our “populati...2239 days ago
HISAT2: a fast and sensitive alignment program for mapping next-generation sequencing reads
HISAT2 is a fast and sensitive alignment program for mapping next-gener...ncing reads (both DNA and RNA) to a population of human genomes (as well as...global GFM index that represents a population of human genomes, HISAT2 uses...0 indexes needed to cover the human populati...2191 days ago
2071 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-th...is being used in clinical sequencing trials in the Mainstreaming Cancer Genetics programme. Tutori...2021 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
HipSTR was specifically developed to deal with these errors in the hopes of obtaining more robust STR genotypes....stutter models using an EM algorithm Mining candidate STR alleles from populati...1888 days ago
DISTRUCT: a program for the graphical display of population structure
distruct is a program that can be used to graphically display results produced by the...form as used in "Genetic structure of human populations" Science 298: 2381...e user to control left-to-right printing order of populati...1870 days ago