Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of Sange...C, Borodina T and Himmelbauer H. from the Max-Planck-Institute for Molecular Genetics. SSAKE - The Short Sequence A...3517 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of San...C, Borodina T and Himmelbauer H. from the Max-Planck-Institute for Molecular Genetics. * SSAKE - The Short Sequence...3240 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
..., dbSNP, Genbank:http://www.softgenetics.com/PDF/NextGene_UsersManual_we...ailable halotypes, does not use population labels or genome-wide measure...d to represent variation in one population; Fairly popular Input: Refe...xtracts data from the mixed DNA population Input: HAPSEQ segdat or se...2907 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that man...detection methods this number is expected to increase. On the other hand; In genetics, the term palindrome refers t...2209 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-...s, using Illumina read pairs sequenced from mixed populations at extremely high and variab...as snake venom glands, or rapidly evolving viral populati...2683 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...s. ancestor -- Any organism, population, or species from which some other organism, population, or species is descended by r...ter states is the best. phylogenetics -- Field of biology that deals...ed into the two areas of phylogenetics and taxonomy. taxon -- Any n...2460 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large populati...2348 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a circuit (a “network” of...possible to infer details about the network as a whole at the species and/or populati...2286 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on...rg/ LTR_FINDER http://tlife.fudan.edu.cn/ltr_finder/ LTR_STRUC http://www.genetics.uga.edu/retrolab/data/LTR_Str...2272 days ago
List of non-commercial NGS genotype-calling software
Meaningful analysis of next-generation sequencing (NGS) data, which are produced extensively by genetics and genomics studies, relies...2094 days ago