Results for "Primary"
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Next Generation Sequencing (NGS) Tutorials
...= NGS data analysis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline DOI: 10.1038/nbt.2134 NARWHAL, a primary analysis pipeline for NGS dat...3502 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also supports other a...1234 days ago
Phylogenomics/Phylogenetic website
Welcome to phylobabble.org, a discussion forum for phylogenetic theory and applications. The primary goal of this forum is to discuss best practice and new developments in phylogene...3696 days ago
- HapSolo, that identifies secondary contigs and defines a primary assembly based on multiple pairwise contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores...
1107 days ago
- ...or next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a primary tool for the simulation study...
2755 days ago
- One of our primary focuses will be to develop an understanding of the various ways in which we can assign a probability to some chance event. We'll also learn the fundam...
2748 days ago
- ...nd how to run Velvet in general, how to accurately estimate the insert size of a paired-end library through the use of Bowtie, the primary parameters of velvet, and the...
2719 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goal is to merge two or more assemblies in order to enhance contiguity and correctness of both. GAM-N...2709 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to conduct independent genomic analyses. We will study the lea...2364 days ago
DendroPy: a Python library for phylogenetic computing
...nent of more complex multi-library phyloinformatic pipelines, or as a scripting “glue” that assembles and drives such pipelines. The primary home page for DendroPy, with...2219 days ago
