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Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...within your conda environment. In this case, it should install things into your conda-directory. When you install packages via cpan it will also print the folder perl is installing...418 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...Verify the installation by running a BioPerl script or entering the following command to check the BioPerl version: perl -MBio::Perl -e 'print "$Bio::Perl::VERSION\n"'...424 days ago
Comment on "Perl Module Installation"
...Verify the installation by running a BioPerl script or entering the following command to check the BioPerl version: perl -MBio::Perl -e 'print "$Bio::Perl::VERSION\n"'...424 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...paf.gz miniasm -f \ ../../trimming_practical/nanofilt/nanofilt_trimmed.fastq \ ./minimap.paf.gz > miniasm.gfa awk ’/^S/{print “>”$2”\n...798 days ago
- ...sp; bookmark [-d] [-n name] [-print] [> file] [chrom:from-to]&... Customise the genotype rows printed under the VCF tracks. ...
1522 days ago
Comment on "How to set up SSH on Ubuntu 18.04"
...service will start automatically. To verify that the installation was successful and SSH service is running type the following command which will print the SSH server status: sudo...1558 days ago
Comment on "Extract fasta sequence from a multifasta file with fasta header Ids"
perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file If you have a large number o...hen you can use this one line: perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids....1912 days ago
Comment on "LAMSA: fast split read alignment with long approximate matches"
...[false] -C --comment Append FASTQ comment to SAM output. [false] -o --output [STR] Output file (SAM format). [stdout] -h --help Print this short usage. -H --HELP Print a detailed usage....2125 days ago
- ...e:$ mashmap -r ref.fa -q seq.fq [OPTIONS]$ mashmap --rl reference_files_list.txt -q seq.fq [OPTIONS] Available options------------------h, --help Print this help page -r <value&...
2125 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...18_oly_pacbio_miniasm_reads.gfa 3 Convert miniasm output GFA to FASTA The FASTA file is needed to re-run minimap in Step 4 below. awk '$1 ~/S/ {print ">"$2"\n"$3}' 20170918_oly...2169 days ago
