Software packages for next gen sequence analysis
...* BWA - Heng Lee's BWT Alignment program - a progression from Maq. BWA...AP (Genomic Mapping and Alignment Program) for mRNA and EST Sequences....(Short Oligonucleotide Alignment Program). A program for efficient gap...lab at UCLA). POSIX. * CHiPSeq - Program used by Johnson et al. (2007)...3239 days ago
2710 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...tion: SNV caller, Python language, standalone program, uncovers cell-population het...om paired end reads; standalone, command line program; Written in C++ and Python I...Description: command-line, standalone package program; available in Perl, Python, a...2905 days ago
Worldwide funding agencies to fund your bioinformatics research !!
...ions. Human Frontier Science Program: Research grants from th...ding of disease. This ongoing program includes grants for immunolog.... Bush Foundation Fellowship Program: Leadership’s many...International Research Grants Program: The IRGP seeks to promo...2934 days ago
Genome Assembly Tools and Software - PART1 !!
...ATRAP 0.2 – SOLiD Assembler TRAnslation Program A color space assembly m...natively, SATRAP can be used as a stand alone program to perform color space transl...anner. From a good number of tests we see the program yields excellent results both...2682 days ago
Source Code and Pseudo Code !!
...and informal language that helps programmers develop algorithms. Pseud...ail so as to directly support the programming effort. It is the purpose...ntical to its implementation in a programming language. Try to indent a...d of functions. It will make your program much more readable. SPELLIN...2655 days ago
Perl Special Vars Quick Reference
...group id of process. $) Effective group id of process. $0 Program name. $^O Operating Sys...sult. $^S Exceptions being caught. (eval) $^T Base time of program start. $^V Perl version...2641 days ago
Awesome perl frameworks, libraries and software - PART 1
...l open source home automation program. It's fun, it's free, and it'...le and consistent application programming interface to the World-Wi...ary for writing reactive Perl programs. It provides base classes fo...ERR from Perl, XS or external programs beppu/squatting - A Ca...2486 days ago
Converting BLAST output into CSV
...reciprocal BLAST, or something. As with most programs that run on UNIX, the text output is in some specific format. If the program is popular enough, there will...’ll do that using the ‘git’ program: git clone https://githu...2334 days ago
Bioinformatics Web Application Development with Perl
...elopment The old days of CGI programs and the simple development s...dule central, modern Perl web programming follows a stricter separa...and applications, though good programmers can build larger things w...prowess as a general purpose programming language as well as its f...2318 days ago