Results for "Programming with Perl"
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List of In-silico Binding Site Prediction Tools
Following are the list of In-silico Binding Site Prediction in Proteins...of known ligand binding sites within the PDB which is navigable...tages, labeling of grid cells with depth factors followed by a d...on. It was developed in the C programming language and is curren...lefts und fill these cavities with...3757 days ago
Perl one-liner for bioinformatician !!!
...where knowing a little bit of Perl onliner is extremely helpful. Perl one-liners are small and awes...if /regex/' #Left align lines with 5 white spaces if matches a p...quo;x’ 50 character longperl -le 'print join ", ", map { o...s/foo/bar/' #Substitute a foo with a bar in a line with a regexp...3642 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Work...to map short reads generated with the Illumina platform to refe...(GS20 or GS FLX). Compatible with 454, Solexa and Sanger data....Smith Genome Sciences Centre. Perl/Linux. SOAPdenovo - Part of t...onal University of Singapore. Perl/R. FindPeaks - perform analys...3532 days ago
Rosalind Problem Solution with Perl
Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get...s-textbook-track I will provide solution of all the Rosalind problem with Perl for community. Check out the...3266 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Wo...er, but is much more general, with a very flexible user interfac...Smith Genome Sciences Centre. Perl/Linux. * SOAPdenovo - Part of...onal University of Singapore. Perl/R. * FindPeaks - perform anal...e reads mapped on the genome (without any ab initio assembly of...3256 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers...dalone program, language C++, Perl Input: mpileup (SAMtools) O...s four algorithms; written in Perl; required tools: samtools, ta...ative de novo mutation (DNM), with the following fields”...r filtering and data analysis with an online network for genetic...2922 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a fi...identify the assembly errors with high accuracy in an unbiased...so supporting and integrating with the rest of your typical NGS...sp;datasets. The command-line Perl script and additional files v...gn Illumina reads, optionally with PCR primers embedded in the s...2699 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actio...so as to directly support the programming effort. It is the purpose of...EndCase; If...Endif; Call ... with (parameters); Call; Return .....ut, output, edit, test , etc. with careful indentation tend to f...2672 days ago
Perl Special Vars Quick Reference
$_ The default or implicit variabl...TCH} Similar to $` without performance penalty. Requi...Operating System name. Perl Status Info $] Old: Version and patch number of perl interpreter. Deprecated....rent value of flag associated with -c switch. $^D...2658 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a script written in Perl that will assist you with your MySQL configuration and...t history on the command line with sparklines. A mash up of git...2503 days ago
