Results for "Programming with Perl"
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It is often necessary to import sample te...ta.xls". This method requires Perl runtime to be present in the...and then load the worksheets with readWorksheet. The ...nbsp;format, it can be opened with the function read.mtp&nb...Here is an example of a table with 4 rows and 3 columns. 100&...2503 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quan...ination of read compatibility with targets) Software (C++) htt...yout Consensus (OLC) approach without the necessity of an error...Scaffolding genome assembly with error-containing long sequenc...ds, draft genomes) Software (Perl) https://github.com/warrenlr...2385 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, w...::Levenshtein::Damerau defaults to using a pure perl implementation, but if you've...n edit distance. Text::Fuzzy::PP is a pure perl implementation of the same in...2355 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide...ons—were easy to create with Perl and CGI. Thanks to Perl's ubiquity as a language for system...o both client and server side programming, with rich client interfaces and powerful backends. Perl is still well suited for deve...2335 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -...Time) and local computer timeperl -le 'print scalar gmtime'perl...@ascii' # Generate an array with odd numbers from 1 to 100perl...print encode_base64("string")'perl -MMIME::Base64 -0777 -ne 'pri...2316 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of...ime.For each line, it matches with given pattern in the given or...t all that lines that matches with the given patterns which is t...below, we identify sequences with lengths > 14: $ awk '{pri...also store data in the memory with...2293 days ago
Python learning resources for bioinformatics and computational biologist !
...hing, which will be made easy with the right tools/libraries. Professi...ons visit http://www.bestprogramminglanguagefor.me/why-learn-pytho...discussion/view/459/python-vs-perl More resources at https://gith...are the list of useful python programming resources: 20 Python Libra...2269 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they...a somewhat recent version of Perl (version 5.8 or above). More about the basic perl module installation steps che...ar zxf Bio::SCF.tarcd Bio::SCFperl Makefile.PLmakemake testmake...2232 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language that is open source, flexible, po...al example which shows NGS data processing with the help of python packages and programming. Python has a couple...) It lend itself well to being integrated with...2196 days ago
LINKS scaffolder bloomfilter setting !
➜ bin git:(master) ✗ ls -l total 68 dr...xx -I/home/urbe/anaconda3/lib/perl5/5.22.0/x86_64-linux-thread-m..._t, size_t, FILE*)’, declared with attribute warn_unused_result...THE SAME FILE SUPPLIED IN -f WITH SAME -k VALUE IF YOU DO NO...and -s. ERROR fixed perl: symbol lookup error: /home/u...2164 days ago
