Results for "Programming with Perl"
Users
Skills: Programming with Perl2926 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...r you need to install several perl modules and dependencies. Installing Perl modules manually by resolving...nbsp; 00:00(3/5): perl-CPAN-1.9205-31.fc9.i386.rpm&n...ile please, now you are ready with CPAN and can download modules...quick and best way to install Perl modules, Bioperl. Following a...3951 days ago
Five unique traits of effective computational biologist
...d biological programmer learn Perl's regular expression when they start...rammer also read about the BioPerl packages, genomics, DNA string, geno...be passionate about more than programming — you must also...but also defend your finding with scientific words. Thanks to...3951 days ago
- +21 more Blogs
Bookmarks
- Nice step wide information on perl module installation.
3951 days ago
Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3951 days ago
- +95 more Bookmarks
Files
Regular Expression Cheat Sheet
The Regular Expression are the sole of Perl language, and for bioinformatician it is just a magical stick to resolve gingatic string data. We did not find any good and user friendly regu...3953 days ago
Detect the sequence pattern and its location in fasta file with match and mismatches information.
This script is one of my old script to detect some centromeric pattern in chromosomes. User can also control the number of mismatches allowed through command line .. To run: perl centro.pl3869 days ago
- +4 more Files
Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
In Bio-informatics based genome sequencing and predicting metabolic pathways resea...se, whereas SPSS is for non-programmers and R need programming skills. I am wondering...Bio-informatics work that is math heavy and deals with...3953 days ago
- Why bioinformatician still using Perl when Python is easy to code, good in ReXp and faster than perl?
3952 days ago
- +1 more Discussion topics
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer do...easy implementation, it comes with a genuinely useful standard library...ximately all problems related with biology. Some of the new fea...c trees.IO from newick files, with support for multiple entries....3948 days ago
- ...uage that balanced functional programming with imperative programming Ruby is a dynamic, reflectiv...t combines syntax inspired by Perl with Smalltalk-like features. Ruby...t was influenced primarily by Perl, Smalltalk, Eiffel, and Lisp. Ruby supports multiple programming paradigms, including f...
3948 days ago
- +15 more Pages
Top-level pages
- The completion of the first human genome drafts was just a start of the mod...es, the main challenge is to cope with the analysis of vast production of s...d to expertise in any one one the programming language. However, som...d to introduce you new biological programming languages with...
3949 days ago
- "Bioinformatics is a science of biological predictions and analysis" --...new algorithms and statistics with which to assess relationships...gical data (e.g., the dynamic programming algorithm for sequence...ject [4] would be meaningless without the bioinformatics compone...r example, the classification with...
3948 days ago
- +31 more Top-level pages
Wire posts
News
- Google provide free class for people with a little bit of programming experience who want to learn Python. The...ractice Python coding. These materials are used within Google to introduce Python to people who have just a little prog...
3953 days ago
Bioinformatics: Introduction to PERL
This course is aimed at those new to programming and provides an introduction to programming using Perl. By the end of this course, attendees should be able to write simple Perl programs and to understand mo...be taught using the online Learning Perl materials created by Sofia Ro...3952 days ago
- +9 more News
Opportunity posts
- UNIVERSITY OF CALCUTTA A walk-in-interview will be held on 15.7.2013 at 12 noon in the Department of Biophy...e in Bioinformatics or allied subjects and should be proficient in C-programming language. Must be familiar with...
3950 days ago
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Soc...fore also have to provide researchers with advices on their experimental...nsure compliance of produced datasets with pipelines requirements. He/sh...g expertise in script writing (Python/Perl) and pipeline development....3950 days ago
- +143 more Opportunity posts
ResearchLabs posts
- The research interest of this group include constraint programming, structure prediction in simplified protein models, investigation of protein energy landscapes, detection of RNA...
3941 days ago
Fun
Perl Poem: Parse it in both Perl and English!
Larry's, er, corpus has fortunately been overshadowed by that of the reigning Perl...es: Computer Poetry Meets the Perl Programming Language". (The paper...and the Guardian: #!/usr/bin/perl APPEAL: listen (please, ple...length(of-days) # listen (a perl poem)# Sharon Hopkins# rev. J...3919 days ago
Bioinformatician special skills !!
Bioinformatician and Computational biologist are the only programmers on Earth who c...)$/; /"(?:[^"\\]++|\\.)*+"/; /^[+-]?\ *(\d+(\.\d*)?|\.\d+)([eE][+-]?\d+)?$/; perl -ne 'BEGIN{$/=">"}if(/^s*(...3897 days ago
- +3 more Fun
Video
Bioinformatics 101 - Running BLAST
How to format the database for BLAST, run the command, view the output file, and use BioPerl and Perl to parse the output. By David...3898 days ago
- lecture 9, Chem. C100, Spring 2013, UCLA
3910 days ago
- +2 more Video
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1218 days ago
- # To follow these instructions, we'll assum...er where you want to install different Perls, and cd into it: # Note tha...ant to maintain such software: export PERL_BASE="$HOME/perl" mkdir -p $...MSKCC: curl -sL https://cpanmin.us | $PERL_BASE/perl-5.24.1/bin/perl - -...
2145 days ago
- +167 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want to do de-novo assembly, map re...3531 days ago
Which math/statistics programming language/application do you most frequently use in bioinformatics?
I'm doing a bit more statistical analysis on some bioinformatics things lately, and I'm curious if there are any programming languages that are particularly good for this NGS computation. What suggestions do you guys have? Are there any languages that have exceptionally good libraries?3527 days ago
- +1 more Polls
Groups
Perl(Practical Extraction and Reporting Language) is a family of high-level,...eral-purpose, interpreted, dynamic programming languages. Perl...t processing easier. But, nowadays perl is the heart of biological/ge...can hate weird perl but can't live without it.3953 days ago
R is a free software programming language and a software environment for statistical computi...larity has increased substantially in recent years with the availability of huge geno...genomic data. Bioconductor uses the R statistical prog...3952 days ago
- +4 more Groups
Tags
Comments
Comment on "Perl and BioPerl Tutorials"
Perl books http://perltraining.com.au/notes.html https://github.com/vhf/free-programming-books/blob/master/free-programming-books.md#perl2617 days ago
Comment on "Which of the following programming language is best for a bioinformatics beginner?"
...ste, but I'd like to vote for Perl and BioPerl as an excellent language for...ally, the combination of Perl with the BioPerl is simply a...there is as many ways to use Perl as programers are, so it can...nual) or very complex (object programming using Moose). Some Bio...3532 days ago
- +6 more Comments
