2777 days ago
BIMA V3: an aligner customized for mate pair library sequencing
...ome is a challenging and time consuming process for most NGS alignment programs. Large insert sizes, introduc...up to 20 times faster and 25% more accurate than popular NGS alignment programs when processing mate pair seq...2711 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
...ds in the Ecogene data set are located correctly). Specificity: Prodigal's false positive rate compares favorably with other gene identification programs, and usually falls under 5%....2697 days ago
2661 days ago
2658 days ago
2647 days ago
Laj: viewing and manipulating the output from pairwise alignment programs
Laj is a tool for viewing and manipulating the output from pairwise alignment programs such as blastz. It can display interactive dotplot, pip, and text representations of the alignmen...2635 days ago
2621 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate contigs from a...2563 days ago
CABOG: Celera Assembler with Best Overlap Graph
...ists around the world. CABOG is one of many software programs called genome assemblers. These programs exist to overcome the fundame...icrobes, 2006). Today, CABOG is one of the leading assembly programs for data sets that include pa...2560 days ago