molinspiration: broad range of cheminformatics software tools supporting molecule manipulation
Molinspiration offers broad range of cheminformatics software tools supporti...n of various molecular properties needed in QSAR, molecular modelling and drug design, high quality molecule depict...1952 days ago
SeqKit - a cross-platform and ultrafast toolkit for FASTA/Q file manipulation
FASTA and FASTQ are basic and ubiquitous formats for storing nucleotide and protein sequences. Common manipulations of FASTA/Q file include converting, searching, filtering, deduplication, sp...1952 days ago
BUSCA: an integrative web server to predict subcellular localization of proteins
BUSCA (Bologna Unified Subcellular Component Annotator) is a web-server for predicting protein subcellular localization. BUSCA integrate...ent tools to predict localization-related protein features (DeepSig, TPpred3, P...ocalization of both globular and membrane protei...1934 days ago
MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
MACSE aligns coding NT sequences with respect to their AA translation while allowing NT sequences to contain multipl...hifts and/or stop codons. MACSE is hence the first automatic solution to align protei...1923 days ago
IQ-TREE: Efficient software for phylogenomic inference
A fast and effective stochastic algorithm to infer phylogenetic trees by maximum likelihood. IQ-TREE compares f...are faster in 75.7% and 47.1% of the DNA alignments and 42.2% and 100% of the protei...1923 days ago
multiPhATE: bioinformatics pipeline for functional annotation of phage isolates
multiple-genome Phage Annotation Toolkit and Evaluator (multiPhATE). multiPhATE is a throughput pipeline driver that...hage gene-calling algorithm and assigns putative functions to gene calls using protei...1836 days ago
MSAProbs - Parallel and accurate multiple sequence alignment
...lished state-of-the-art multiple sequence alignment algorithm for protein sequences. The design of MSAProbs is based on a com...is optimized for shared-memory CPUs by employing a multi-threaded design, and further parallelized for...1781 days ago
Shouji: a fast and efficient pre-alignment filter for sequence alignment
The ability to generate massive amounts of sequencing data...s work, we explore the use of hardware/software co-design and hardware acceleration to...een two given sequences. The second key idea is to design a hardware accelerator design...1664 days ago
GSP4PDB: a web tool to visualize, search and explore protein-ligand structural patterns
GSP4PDB is a user-friendly and efficient application to search and discover new patterns of protein-ligand interaction. GSP4PDB is part of the services provided by the Bioinformatic Group&...1532 days ago
ProteoClade: A taxonomic toolkit for multi-species and metaproteomic analysis
...ased annotation and quantification of bottom-up proteomics data. It is designed to be user-friendly, and has...ent-Derived Xenografts (PDXs) or host-pathogen interactions. Reference protein sequence databases are used...1529 days ago