Results for "Protein sequence/structure annotation"
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MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
MOSAIK is a stable, sensitive and open-source program for mapping second and third-generation sequencing reads to a reference genome. Uniquely among current mapping tools...2921 days ago
- Stampy is a package for the mapping of short reads from illumina sequencing machines onto a reference genome. It's recommended for most workflows, including those fo...
2921 days ago
PolyPhen-2: Prediction of functional effects of human nsSNPs
PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.2918 days ago
- A free extensible and customizable gene annotation portal, a complete resource for learning about gene and protein function. http://biogps.org/#goto=welcome
2918 days ago
- This histone database can be used to explore the diversity of histone proteins and their sequence variants in many organisms. The resource was established to better understand how sequence v...
2907 days ago
- methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but a...
2907 days ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the...ry assembly, and to create and collate GC content, read coverage and taxon annotation for the preliminary assembly,...
2897 days ago
- Blobsplorer is a tool for interactive visualization of assembled DNA sequence data ("contigs"...It allows the simultaneous display of GC content, coverage, and taxonomic annotation for collections of contigs wi...
2896 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configurati...2180 days ago
- DarkHorse is a bioinformatic method for rapid, automated identi...g of phylogenetically atypical proteins on a genome-wide basis. It w...ex (LPI) score for each genome protein. LPI scores are inversely pr...ns of horizontally transferred proteins, but can...f phylogenetic granularity and protein se...
2888 days ago
