Results for "Protein sequence/structure annotation"
Top-level pages
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and refe...Smith-Waterman-Gotoh) of DNA/protein against a reference. Authors...near exact matches in DNA or protein databases using a hash table....ating the location of a bound protein of interest. Original algorithm...3257 days ago
Comprehensive list of visualization tools for biological pathways
The study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation...ion of biological pathway diagrams in a visual way and the annotation of the components and interac...2301 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental...ction of interaction sites on protein surface and tools for predict...on of pockets and cavities in proteins structure, and quantitation...ite prediction and functional annotation based on binding-site similar...2216 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...result is suitable for adding annotation by annovar.” HapMu...with predicted transcript and protein effects using third party tools,...of amino acid substitution on protein; Calculates Bayes posterior prob...ncer-specific High-throughput Annotation of Somatic Mutations; Last up...2923 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientists discovered that many genomes contain stretches of highly repetitive DNA sequences ( see Reassociation...2225 days ago
Tool: Gene Set Clustering based on Functional annotation (GeneSCF)
----------- Gene Set Clustering based on Functional annotation GeneSCF serves as command line tool for clusterin...g the list of genes given by the users based on functional annotation (Gene Ontology, KEGG, REACTOM...2886 days ago
- Bash Script source: https://gist.github.com/santhilalsubhash/367b...2baefbb6534f1299fd30cb57a29/sample.GTF) file to annotation table format. It generated tw...f0005c4ce7321c5ae57fc8b4a14c7f4/sample.GTF_enst_annotation.txt)2) Gene wise chromosome l...
2120 days ago
- alignment: the mapping of a raw sequence read to a location within a reference genome. The mapping occurs because the sequences within the raw read match or align to sequ...
2883 days ago
Genome Assembly Tools and Software - PART1 !!
...ing both de Bruijn graphs and protein HMMs. The inclusion of HMM in...NA-Seq reads Comprehensive annotation and quantification of transcr...e signals, and genome feature annotations. It provides an easy way for...ontigs to the query reference protein. GRASP achieves much higher sens...2700 days ago
Source Code and Pseudo Code !!
An algorithm is a procedure for solving a problem in terms of the actions to be executed and the order in which those actions are to be executed. An algorithm is merely t...2673 days ago
