Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The lengths of these fragments are assumed to be sampled from...2536 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two different ancesto..., from a Messenger RNA template ( Messenger RNA contains the coded information for protein sy...2476 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (uses pseudoalignment for rapid determination of read compatibility with targets) Software (C++) h...2385 days ago
Tools for bacterial whole genome annotation
...s that includes prediction of protein-coding genes, as well as other f...ted tool for Bacterial GEnome Annotation ComparisON), a fast tool for...fies repeats, aligns ESTs and proteins to a genome, produces ab-initio...thesizes these data into gene annotations having evidence-based qualit...2346 days ago
2319 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically...ViGaTOR Visualizing and analyzing protein-protein interaction networks http://...ex.org/ Osprey Visualization and annotation of biol...a NetworkBLAST Analysis of protein interaction networks across spec...2302 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results...are/abyss-explorer BamView Genome browser and annotation tool that allows visualizatio...resources/software/artemis/ DNannotator Annotation web toolkit for regional geno...2298 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processing. It searches one or more files to s...2294 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated i...2288 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
Strand NGS is a biologist friendly NGS analysis tool that allows biologists to analyze their data usi...ence, Bangalore. Prior to joining Strand NGS team, Suman has worked extensively on protein sy...2278 days ago