Finding Patterns in Biological Sequences
In this report we provide an overview of known techniques for discovery of patterns of biological sequences (DNA and proteins). We also provide biological motivation, and methods of bi...2703 days ago
FSA: Fast Statistical Alignment
...thods for Optimization and Control of Multiple Alignments." FSA brings the high accuracies previously available only for small-scale analyses of proteins or RNAs to large-scale proble...2657 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...an explicitly defined signature domain for each and every CAZyme family along with its location in all the relevant full-length CAZyme proteins in all sequenced genomes...2545 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally un...2521 days ago
eQuant : energy-based quality assessment of protein
...uctures.eQuant is a service for structure quality assessment of single proteins, which utilizes a coarse-grai...idues. You can submit single PDB files or archives containing a set of proteins. https://biosciences.hs-mitt...2518 days ago
CrocoBLAST: Optimized parallel implementation of local sequence alignment algorithms
Local sequence alignment is a cornerstone of bioinformatics, allowing to compare the amino-acid sequences of different proteins, or the nucleotide sequences of different pieces of DNA....2488 days ago
Foldit: Solve Puzzles for Science
...ience, in collaboration with the UW Department of Biochemistry. The objective of Foldit is to fold the structures of selected proteins as perfectly as possible htt...2338 days ago
Japanese Multi Omics Reference Panel, jMorp
...me data were obtained by nanoLC-MS. We could measure several thousands of metabolites including the uncharacterized ones, and several hundreds of proteins until now. https://academic....2337 days ago
HTTDB - Horizontally transferred transposable elements database
...genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is mediated by its own proteins and does not contribute to th...2306 days ago
PhyloGrapher - Graph Visualization Tool
PhyloGrapher is a program designed to visualize and study evolutionary relationships within families of homologous genes or proteins (elements). PhyloGrapher is a drawin...2262 days ago