FastANI: fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI)
FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI). ANI is defined as mean nucleotide identity of orthologous ge...2118 days ago
2086 days ago
Heatmapper: web-enabled heat mapping for all
...data values by hovering their cursor over each heat map, or by using a searchable/sortable data table view. Ref https://www.ncbi.nlm.nih.gov/pubmed/271902362039 days ago
Platypus: A Haplotype-Based Variant Caller For Next Generation Sequence Data
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly...2015 days ago
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1937 days ago
Osprey: Network Visualization System
...reitkreutz, BJ., Stark, C., Tyers M. "Osprey: A Network Visualization System." Genome Biology 2003 4(3):R22 [Genome Biology] [PDF] [PubMed] and supported by the&nb...1928 days ago
Apollo: First instantaneous, collaborative genomic annotation editor available on the Web
...vailable. Users are able to directly set an annotation to a specific state, choosing from the ‘History’ display. Adding and updating PubMed IDs will prompt users with a...1796 days ago
1709 days ago
SHAMAN: a user-friendly website for metataxonomic analysis from raw reads to statistical analysis
SHAMAN is a shiny application for differential analysis of metagenomic data (16S, 18S, 23S, 28S, ITS and WGS) including bioinformatics treatment of raw reads for target...1353 days ago