COSMOS, our workflow management system for NGS data
...for implementing large-scale parallel workflows focusing on, but not restricted to, large-scale short-read "NGS" sequencing data is open-access published via Advance Access in Bioinfo...3590 days ago
Swabs to Genomes: A Comprehensive Workflow
...udy was to design, test, troubleshoot, and publish a simple, comprehensive workflow from the collection of an environmental sample (a swab) to a published microbial genome; empowering...3572 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
...pelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google Group) Bpipe has been published in Bioinformatics! If you use...2922 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...alistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE have now been published in the journal Genome Researc...2813 days ago
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CAR: Reconstructing Contiguous Regions of an Ancestral Genome
...ther increased by mapping inversions as small as 31 bp. Analysis of the predicted evolutionary breakpoints in the human lineage confirms certain published observations but disagrees wi...2560 days ago
Pollux: platform independent error correction of single and mixed genomes
...we locate and correct insertion, deletion, and homopolymer errors while remaining sensitive to low coverage areas of sequencing projects. Using published data sets, we correct 94% of...2559 days ago
dbCAN: a web server and DataBase for automated Carbohydrate-active enzyme ANnotation
...relevant full-length CAZyme proteins in all sequenced genomes; dbCAN provides the most complete set of metagenomic CAZyme genes published so far and represents the fir...2549 days ago