pWhatsHap: a parallel, high-performance version of WhatsHap
...ed and engineered pWhatsHap, a parallel, high-performance version of WhatsHap. pWhatsHap is embedded in a toolkit developed in Python and supports genomics dataset...1996 days ago
NxRepair: error correction in de novo assemblies using Nextera Mate Pair Reads
NxRepair is a python module that automatically detects large structural errors in de novo assemblies using Nextera mate pair reads. The decector will break a contig at the sit...1925 days ago
UpSetR: An R Package for the Visualization of Intersecting Sets and their Properties
...que see the UpSet website. You can also check out the UpSetR shiny app. Here is the source code for the shiny wrapper. A Python package called py-u...1921 days ago
1673 days ago
Gooey: Turn (almost) any Python command line program into a full GUI application with one line
Turn (almost) any Python command line program into a full GUI application with one line The easies...y git clone https://github.com/chriskiehl/Gooey.git run setup.py python setup.py install1645 days ago
1640 days ago
Seq: A high-performance, Pythonic language for bioinformatics
...gramming language for computational genomics and bioinformatics. With a Python-compatible syntax and a host...Seq makes writing high-performance genomics software as easy as writing Python code, and achieves performanc...1622 days ago
1618 days ago
HaploTypo: a variant-calling pipeline for phased genomes
...spondence for each heterozygous variant called on a phased reference genome. Availability and Implementation HaploTypo is implemented in Python 2.7 and Python 3.5, and is freely available...1596 days ago
LibsDyogen: Libibrary for comparative genomics
Library of usual classes and functions written in python and used in the Dyogen team for comparative genomics applications. Collaborative python library used in the DYOGEN teamfor studying the evolution of gene order in vertebrates. http://www.ibens.ens.fr/?rubrique43&lang=fr1591 days ago