Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, H...Rene Warren and Steven Jones at Canada's Michael Smith Genome Sciences Centre. Python/...3242 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...bacterial genome, written in Python and C Input: FASTQ referenc.../normal samples; dependent on python, bamtools, boost, and LAPACK...sms; categorizes effects into classes by functionality; Very popula...copied from SNP list and some classes are added Oncotator D...2909 days ago
Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quali...Genome-wide Physical Maps The purpose of this Python module is help scientists use...lder is an advanced wrapper for Nucmer, written in Python...2685 days ago
Awesome perl frameworks, libraries and software - PART 1
...ocus of the library is to provide classes and functions that allow you...are of more general use and even classes that help you implement simpl.../langs-performance - C++ vs. Python vs. Perl vs. PHP vs. Java vs....e Perl programs. It provides base classes for reactive objects, and spe...2489 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (use...rom NGS data (k-mer based) Software (Python) https://github.com/danielna...colored de Bruijn graphs) Software (Python) http://github.com/cbib/MICA...ree topology (k-mer based) Software (Python)...2371 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s t...tput in out.txt into a spreadsheet format, using a Python script. First, we need...king to run the script blast/blast-to-csv.py using Python:...2337 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used t...mminglanguagefor.me/why-learn-python and http://bioinformatic...Stuff - Al Sweigart Biopython (PDF) Build application...;(PDF) Hitchhiker's Guide to Python! (2.6) How to Make Mist...2255 days ago
2190 days ago
Creating conda environment for python2.7
TIP: By default, environments are installed into the envs&nbs...ment uses the same version of Python that you are currently using,...nt with a specific version of Python: conda create -n myenv p...-no-default-packages -n myenv python TIP: You can add much...2190 days ago
Learning Python Programming - a bioinformatician perspective !
Python Programming is a general purpose programming language...he most important features of python is its rich set of utilities...t era of big biological data, python and biopython is getting more...lore features and packages of python which are widely used in the...2182 days ago