Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequence reads and a file of quali...Genome-wide Physical Maps The purpose of this Python module is help scientists use...lder is an advanced wrapper for Nucmer, written in Python t...2680 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and software. major/MySQLTuner-perl - MySQLTuner is a...p;- Shapefile to SVG renderer in Perl famzah/langs-performance - C++ vs. Python v...2483 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
kallisto Transcript abundance quantification from RNA-seq data (use...rom NGS data (k-mer based) Software (Python) https://github.com/danielna...colored de Bruijn graphs) Software (Python) http://github.com/cbib/MICA...ree topology (k-mer based) Software (Python)...2365 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a...ection. Text::LevenshteinXS and Text::Levenshtein::XS are both versions of the Levenshtein algorithm...2335 days ago
Converting BLAST output into CSV
Suppose we wanted to do something with all this BLAST output. Generally, that’s t...tput in out.txt into a spreadsheet format, using a Python script. First, we need...king to run the script blast/blast-to-csv.py using Python:...2331 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of...k/PSGI standard for Perl web deployment and recent versions are exploring high-scalabilit...en generate) your database schema for you. Recent versions of DBIC have demonstrated tha...2316 days ago
Python learning resources for bioinformatics and computational biologist !
Python is a general-purpose language, which means it can be used t...mminglanguagefor.me/why-learn-python and http://bioinformatic...Stuff - Al Sweigart Biopython (PDF) Build application...;(PDF) Hitchhiker's Guide to Python! (2.6) How to Make Mist...2249 days ago
2184 days ago
Creating conda environment for python2.7
TIP: By default, environments are installed into the envs&nbs...ment uses the same version of Python that you are currently using,...nt with a specific version of Python: conda create -n myenv p...-no-default-packages -n myenv python TIP: You can add much...2184 days ago
Learning Python Programming - a bioinformatician perspective !
...t era of big biological data, python and biopython is getting more...lore features and packages of python which are widely used in the...of the important features of python which makes it a perfect fit...There are two major Python versions, Python 2 and Python 3. Pytho...2177 days ago