Results for "QC"
Blogs
BBTools for bioinformatician !
...s: Code: $ reformat.sh in=reads.fastq out1=r1.fastq out2=r2.fastq Base quality histograms Code: $ reformat.sh in=reads.fq qchist=qchist.txt That stands for "q...2268 days ago
Basic command-line to run BLAST
...ord_size int_value] [-gapopen open_penalty] [-gapextend extend_penalty] [-qcov_hsp_perc float_value] [-max...open_penalty] [-gapextend extend_penalty] [-perc_identity float_value] [-qcov_hsp_perc float_value] [-max...2241 days ago
- ...o /bin/rm -f lib_BubbleUpClustering_temp.a ar -qc lib_BubbleUpClustering_temp....^ /bin/rm -f lib_Chrysalis_temp.a ar -qc lib_Chrysalis_temp.a obj/ali...bin/rm -f lib_TranscriptomeFromVaryK_temp.a ar -qc lib_TranscriptomeFromVaryK_t...
2130 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...ficiency of the assembly. Read Quality Control:Check the qualiy with fastQC.Scripthttps://bioinformaticsonline.com/snippets/view/42540/install-fastqc-using-conda Quality trimming...1201 days ago
Illumina based assembly pipeline steps !
...Merge re-sequenced FastQ files (cat) Read QC (FastQC) Adapter trimming (fastp) R...ad marking (picard; optional) Alignment-level QC (picard, SAMtools) Genome-wi...embly assessment report (QUAST) Present QC and visualisation for raw rea...874 days ago
