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Results for "QC"

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• • BioStar@biostar

  

  Comment on "Short-read assembly using Spades !"

  ...of high quality and do not contain sequencing errors or low-quality bases. This step can be performed using various tools such as Trimmomatic or FastQC. Running SPAdes: After q...

  412 days ago

• • Jit@jit.aber

  

  Comment on "Running Trinity on RNA-seq !"

  Once your assembly is complete, there are several analyses you will likely want to pursue to explore aspects of the biology of your organism based on your assembled t...

  2119 days ago

• • Jit@jit.aber

  

  Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"

  AfterQC AfterQC - Automatic Filtering, T...n the expression levels. FastQC FastQC is a quality...L permanent reports. FastQC can be run as a stand-alone a...ctly from RNA-Seq data. MultiQC MultiQC- Aggregate and v...for other types of sequence. QC-Chain QC-Chain is a...

  2134 days ago

• • Jit@jit.aber

  

  Comment on "Basic command-line to run BLAST"

  ...gaAln2_mouse.tab -evalue 1e-20 -outfmt '6 qseqid qlen qstart qend sseqid slen sstart send pident gaps evalue length frames qcovs bitscore' -max_target_seqs 1 -num_threads 40 -qcov_hsp_perc 90 -threshold 90 -...

  2241 days ago

• • Rahul Nayak@rahul

  

  Comment on "BLAST+ updated !!!"

  ..._file] [-out output_file] [-evalue evalue] [-word_size int_value] [-gapopen open_penalty] [-gapextend extend_penalty] [-perc_identity float_value] [-qcov_hsp_perc float_value] [-max...

  2513 days ago

• • Jit@jit.aber

  

  Comment on "ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenome Assemblies"

  ...group of organisms, developers tell us they are fixing it) linkage map? or other map (RAD-tag based). (software?) BioNanoGenomics can be used for QC also Use a genome browser to...

  2928 days ago