Results for "R)"
Bookmarks
...es Computation Initiative (VLSCI), University of Melbourne. It is based around BWA, GATK and ENSEMBL and was originally designed for human (or similar) data. The master branch is co...3667 days ago
- ...le performance of over 97% strong scaling. Availability and Implementation: MEGADOCK 4.0 is written in C++ with OpenMPI and NVIDIA CUDA 5.0 (or later) and is freely available to al...
3573 days ago
- ...bmed/19815776). There are two options to run ShRec3D (on linuX only so far): the first one uses the Matlab complier runtime environment (MCR), the second one doesn't need...
3433 days ago
- ...coordinate range on the old assembly should be transformed to the new assembly (e.g., as a chain file), transform the coordinates (e.g., with liftOver). https://github.com/...
3021 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These module...
2896 days ago
- ...other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or in...
2833 days ago
- ...ised, so it can be run even on the laptop for small-to-medium size genomes flexible toward many sequencing technologies (Illumina, 454 or Sanger) and library types (paired-end...
2817 days ago
OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembly program (http://en.wikipedia.org/wiki/Sequence_assembly). It uses information from paired-end/mate-pair/long reads t...2809 days ago
Nemo – A stochastic, individual-base, genetically explicit simulation platform
...ecified explicitly, or set at random. The map can hold an unlimited number of loci of different types jointly, at any recombination scale (cM or lower). The effects of linkage can t...2787 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...lowing tools installed and in $PATH, or added to $binpath in the tool: Newbler (specifically runAssembly)Minimus2 (part of AMOS, also requires MUMmer)2708 days ago
