Results for "R"
Blogs
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textbook "Evolution" by Nick Barton, with resources for exploring the literature:...ure 356: 519-520. 2. Green R. E., Reich D., Pääb...A.) 79: 142-45. Testing for selection 1. McDonald &...594 days ago
Tools for Sequence translation !
BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixpack ...i.ac.uk/Tools/st/emboss_sixpack/ esl-translate - http://hmm...ch.edu/GeneMark/license_download.cgi ORFfinder - https://ww...560 days ago
- barrnap - https://github.com/tseemann/barrnap CPAT - https://git...liguowang/cpat, http://lilab.research.bcm.edu/ (web ser...dalone, http://cpc2.gao-lab.org/ (web server) Infernal.../refseq/ Rfam - http://rfam.xfam.org/, https://do...
560 days ago
Tools for Differential expression analysis
...bsp;- https://bioconductor.org/packages/release/bioc/html/apeglm.html ashr - https://github.co...r-project.org/web/packages/ashr/index.html consensusDE ...se/bioc/html/DESeq2.html edgeR - https://bioconduc...github.com/gangwug/MetaCycle RUVSeq - https://bioc...560 days ago
Interesting Bioinformatics Resources !
...o minute video will change your mind on reproducible research 2. Parallel sequencing lives, or wha...gin=false 3. Common-sense approaches to sharing tabular data...12(18)30140-6 6. A video by Dr.Keith A. Baggerly from MD And...ompbiol/article?id=10.1371/journal.pcbi.100042 A must r...557 days ago
- DeepMind’s artificial intelligence system AlphaFold2, predicts the 3D structure of a protein based on its amino acid sequence....50-year-old answer to the problem of protein folding.To read more: ht...on: Facebook:https://www.facebook.com/RASALSI/ Twitter: https://twit...
554 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which are also known as mi...ased tool that can identify SSRs in DNA sequences. It can be...ol that designs PCR primers for SSRs. It can design primers f...441 days ago
Chromosome breakpoint - a breakup to remember
Chromosome breakpoint refers to the physical location where a chromosome is broken and r...rangement of genetic material resulting from a chromosome bre...f the rearrangement, such as translocations, inversions, dele...of the duplicated segment. Chromosome breakpoints can also b...441 days ago
Common methods to discover tandem repeats
Tandem repeats are DNA sequences that are repeated in a contiguous manner in the genome. These sequence...Masker: RepeatMasker is another software tool that can identi...can be used to detect tandem repeats by digesting genomic DN...439 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an essentia...ome general steps to follow for mapping reads to a genome:...data, it may need to be filtered or trimmed before mapping....eference genome is a complex process that requires careful co...439 days ago
