Results for "R"
Top-level pages
Linux Commands Cheat Sheet for Bioinformatics and Computational Biology Professionals
The purpose of this cheat sheet is to introduce biologist and bioinformatician to the frequently use...dir1 dir2 — copy directory dir1 to dir2 recursivel...mdash; show which app will be run by default Process Manage...rn in files grep -r pattern dir — search recursive...2274 days ago
Awk for Bioinformatician and computational biologist
Awk is a programming language which allows easy manipulation of structured data and is mostly used for pattern scanning and processi...ne has 5 words, it will be stored in $1, $2, $3, $4 and $5. $...executed on each line in the order they appear, for example,...2273 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as the...tional analysis. Following are the list of resource and loc...keraid/ mer-engine http://mer-engine.cshl.edu/mer-home.php.../www.ncbi.nlm.nih.gov/CBBresearch/Landsman/TSDfinder/ Tu La...2268 days ago
Webinar on RNA-Seq Data Analysis on 28 Feb 2018
...ows biologists to analyze their data using a very intuitive workflow for the analysis and vis...the workflow which includes Transcriptome/ Genome alignment,...e will highlight the use of Strand NGS features such as PCA,...more time for end data interpretation. This webinar will giv...2258 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms&rdqu...multicellular eukaryotes. In order for a eukaryotic species t...ere, it must not experience strong negative selection, despit...detection / download binary 18662388 Jane ...844 days ago
Python learning resources for bioinformatics and computational biologist !
...ch will be made easy with the right tools/libraries. Professionally, Python is great for backend web developmen...ames, and desktop apps, so there are plenty of resources to h...CodeCademy Python Composing Programs (3.x) Data Struct...nbsp;- Cody Jackson (PDF) Learning Python - Fabrizio Ro...2249 days ago
- ...e G.................Guanine T (or U)..........Thymine (or Uracil) R.................A........G or T M.................A or C B.................C or G o.............Asx.................Aspartic acid or Asparagine C............Glutamine R.................Arg.................Arginine S....
2239 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford...6egKK271NwMq-NfzA%3D%3D nanoporetech/ont-assembly-polish: ONT...3 examples http://mummer.sourceforge.net/examples/ MAFFT ve....sourceforge.net/manual/#nucmer assembly_olc.pdf http://www....2235 days ago
- ...len = seqlen +length($0)}END{print seqlen}' \filename.fasta...ing gnu parallel and gzip: parallel gzip ::: *.fastq To gzi...n a all .fastq.gz files in your current folder: zcat *.gz |...n/g' > filtered.fastq To print difference between the las...
2211 days ago
Installing Bio::SCF perl module
Most Perl modules are written in Perl, some use XS (they are written in C) so requir...ssword for jitendra: rm -f /usr/local/lib/libz.acp libz.a /us...ranslate.c' || echo './'`../ztr/ztr_translate.c; \then mv -f.../libread.a -lz -lm ../read/libread.a(open_trace_file.o): In f...2212 days ago
